kaze 发表于 2006-9-13 15:29

求助:核主成分KPCA的程序代码

小女子目前正在写一片关于绩效评价的论文,需要用到核主成分分析法,不知道有没有高手曾今做过这种程序,希望不吝指教。。。在下先谢了

[ 本帖最后由 lxq 于 2006-9-15 08:27 编辑 ]

happy 发表于 2006-9-14 18:03

KPCA的提出者亲自写的程序

% Kernel PCA toy example for k(x,y)=exp(-||x-y||^2/rbf_var), cf. Fig. 4 in
% @article{SchSmoMue98,
%   author    = "B.~{Sch\"olkopf} and A.~Smola and K.-R.~{M\"uller}",
%   title   = "Nonlinear component analysis as a kernel Eigenvalue problem",
%   journal =       {Neural Computation},
%   volume    = 10,
%   issue   = 5,
%   pages   = "1299 -- 1319",
%   year      = 1998}
% This file can be downloaded from http://www.kernel-machines.org.
% Last modified: 4 July 2003


% parameters
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
rbf_var = 0.1;
xnum = 4;
ynum = 2;
max_ev = xnum*ynum;
% (extract features from the first <max_ev> Eigenvectors)
x_test_num = 15;
y_test_num = 15;
cluster_pos = [-0.5 -0.2; 0 0.6; 0.5 0];
cluster_size = 30;

% generate a toy data set
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
num_clusters = size(cluster_pos,1);
train_num = num_clusters*cluster_size;
patterns = zeros(train_num, 2);
range = 1;
randn('seed', 0);
for i=1:num_clusters,
patterns((i-1)*cluster_size+1:i*cluster_size,1) = cluster_pos(i,1)+0.1*randn(cluster_size,1);
patterns((i-1)*cluster_size+1:i*cluster_size,2) = cluster_pos(i,2)+0.1*randn(cluster_size,1);
end
test_num = x_test_num*y_test_num;
x_range = -range:(2*range/(x_test_num - 1)):range;
y_offset = 0.5;
y_range = -range+ y_offset:(2*range/(y_test_num - 1)):range+ y_offset;
= meshgrid(x_range, y_range);
test_patterns(:, 1) = xs(:);
test_patterns(:, 2) = ys(:);
cov_size = train_num;% use all patterns to compute the covariance matrix

% carry out Kernel PCA
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
for i=1:cov_size,
for j=i:cov_size,
    K(i,j) = exp(-norm(patterns(i,:)-patterns(j,:))^2/rbf_var);
    K(j,i) = K(i,j);
end
end
unit = ones(cov_size, cov_size)/cov_size;
% centering in feature space!
K_n = K - unit*K - K*unit + unit*K*unit;

= eig(K_n);
evals = real(diag(evals));
for i=1:cov_size,
evecs(:,i) = evecs(:,i)/(sqrt(evals(i)));
end

% extract features
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%do not need the following here - only need test point features
%unit_train = ones(train_num,cov_size)/cov_size;
%for i=1:train_num,
%for j=1:cov_size,
%    K_train(i,j) = exp(-norm(patterns(i,:)-patterns(j,:))^2/rbf_var);
%end
%end
%K_train_n = K_train - unit_train*K - K_train*unit + unit_train*K*unit;
%features = zeros(train_num, max_ev);
%features = K_train_n * evecs(:,1:max_ev);

unit_test = ones(test_num,cov_size)/cov_size;
K_test = zeros(test_num,cov_size);
for i=1:test_num,
for j=1:cov_size,
    K_test(i,j) = exp(-norm(test_patterns(i,:)-patterns(j,:))^2/rbf_var);
end
end
K_test_n = K_test - unit_test*K - K_test*unit + unit_test*K*unit;
test_features = zeros(test_num, max_ev);
test_features = K_test_n * evecs(:,1:max_ev);

% plot it
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
figure(1); clf
for n = 1:max_ev,
subplot(ynum, xnum, n);
axis([-range range -range+y_offset range+y_offset]);
imag = reshape(test_features(:,n), y_test_num, x_test_num);
axis('xy')
colormap(gray);
hold on;
pcolor(x_range, y_range, imag);
shading interp
contour(x_range, y_range, imag, 9, 'b');
plot(patterns(:,1), patterns(:,2), 'r.')
text(-1,1.65,sprintf('Eigenvalue=%4.3f', evals(n)));
hold off;
end

fishermanymc 发表于 2009-11-9 07:09

这个代码太经典太经典 每次看都陶醉

studyias 发表于 2012-4-22 20:04

请问kpca的提出者是谁?有网站没有?

dyhkxydfbb 发表于 2012-11-21 21:03

studyias 发表于 2012-4-22 20:04 static/image/common/back.gif
请问kpca的提出者是谁?有网站没有?

http://wenku.baidu.com/view/6ea8c81a6bd97f192279e9a6.html

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